Bra-MIR167b

Basic info.

• miRNA locus ID
• Bra-MIR167b

• miRNA locus accession
• PmiREN002438

• Organism
• Brassica rapa

• Genomic location
• Bra-A01  22755371  22755509  -

• Comments
• A member of family MIR167

• Confidence level
• 

Secondary strurture and sequence

 AAC     -    G  TCT A         C              --A    -     -C       A  TT
    GGTGT ACAG CA   G TGAAGCTGC AGCATGATCTAATT   ACTT TCTTT  TCTGTTG TT  
    ||||| |||| ||   | ||||||||| ||||||||||||||   |||| |||||  ||||||| ||   
    CCACG TGTC GT   C ACTTTGACG TTGTACTAGATTAG   TGAG AGAGA  AGGTAAC AG  
ATTC     C    A  TAC C         C              CTG    T     AA       -  TA

• Get mature sequence
• Get star sequence
• Get miRNA stem-loop seqence
• Get miRNA stem-loop ± 20bp
• Get dot-bracket miRNA secondary structure
• Get miRNA stem-loop ± 500bp
• Get miRNA Promoter

miRNA cluster info.

• Cluster ID: 
• Chromosome: 
• Cluster start: 
• Cluster end: 

miRNA syntenic block

Expression info.

Mature miRNA expression [+]

star miRNA expression [+]

Target gene info.[+]

Link

• Link To miRbase
• Link To PNDB

Reference

• >The auxin response factor gene family in allopolyploid Brassica napus. PLoS One, 2019