Bra-MIR399a

Basic info.

• miRNA locus ID
• Bra-MIR399a

• miRNA locus accession
• PmiREN002536

• Organism
• Brassica rapa

• Genomic location
• Bra-A02  31309938  31310072  +

• Comments
• A member of family MIR399

• Confidence level
• 

Secondary strurture and sequence

 CAA     -A       A        T      ATA    C C   TAT  -   TT   -   TTGT
    TAAGC  GAGCAGT ATAGGGCA CTTTCT   GGCA G GAC   GC AAT  GCT CTT    
    |||||  ||||||| |||||||| ||||||   |||| | |||   || |||  ||| |||    G
    ATTCG  TTCGTCA TGTCCCGT GAGAGG   CCGT C CTG   CG TTA  CGA GGG    
ACAA     CC       A        T      AAA    T A   TTT  G   TT   T   TCTT

• Get mature sequence
• Get star sequence
• Get miRNA stem-loop seqence
• Get miRNA stem-loop ± 20bp
• Get dot-bracket miRNA secondary structure
• Get miRNA stem-loop ± 500bp
• Get miRNA Promoter

miRNA cluster info.

• Cluster ID: 
• Chromosome: 
• Cluster start: 
• Cluster end: 

miRNA syntenic block

Expression info.

Mature miRNA expression [+]

star miRNA expression [+]

Target gene info.[+]

Link

• No link
• No link

Reference

• No reference