Bra-MIR5654b

Basic info.

Secondary strurture and sequence

mature sequence    star sequence
5'



3'
   TTTGTTTGGG  A   C               C        CC    T      G CAT
             TG TAA AAGATAAATCCCAAG ATCATCCA  TTAT AGCTTT A   
             || ||| ||||||||||||||| ||||||||  |||| |||||| |    
             AC GTT TTCTATTTAGGGTTC TAGTAGGT  AATG TCGGAA T   
CGCTCGTGCCGAG  -   T               T        AA    T      G AAG

miRNA cluster info.

miRNA locus ID miRNA locus accession Chromosome Strand Start End
Bra-MIR400 ,   Bra-MIR5654b PmiREN002544, PmiREN002548 Bra-A09 + 24885198 24885540

miRNA syntenic block

Syntenic block ID miRNA locus 1 miRNA locus 1 position Organism miRNA locus 2 miRNA locus 2 position
SY-1189 Bra-MIR5654a Bra-A05: 13217340-13217457 - Brassica rapa Bra-MIR5654b Bra-A09: 24885421-24885540 +

Expression info.

Mature miRNA expression [+]

Reads per million (RPM)

star miRNA expression [+]

Reads per million (RPM)

Target gene info.[+]

Target gene ID psRNAtarget RNAhybrid PARE-Seq?

The first number (from 0-2) indicates the category of CleaveLand4 analysis result while the number in brackets displays the number of degradome libraries which verify the miRNA-target interaction. Click the number to download the selected figure of PARE-Seq reads distribution.

Brara.E01773.1 0.0 0 NA
Brara.H02640.1 1.5 2 NA
Brara.I05037.1 1.5 2 NA
Brara.I05081.1 1.5 NA NA
Brara.I05094.1 1.5 NA NA
Brara.I05207.1 1.5 2 NA
Brara.J00553.1 1.5 NA NA
Brara.K01399.1 1.5 1 NA

Mature miRNA conservation

?

Mature miRNA conservation

    Link

    Reference