Bra-MIRN366

Basic info.

Secondary strurture and sequence

mature sequence    star sequence
5'



3'
CTGTATCAGAAGGTCTT     A                  T         AT          TT    TA   TC    ---C   -A    TTG
                 GCATG AGGGATAGAGAGTGGAAT GAGCCAAGG  GACTTGCCGG  TATA  CAA  GGTT    ATG  ACCA   
                 ||||| |||||||||||||||||| |||||||||  ||||||||||  ||||  |||  ||||    |||  ||||    
                 TGTAC TCTTTATCTCTTGCTTTG CTCGGTTCC  TTGAACGGTC  GTGT  GTT  CCGA    TAC  TGGT   
                      C                  T         AG          -T    TG   TC    CTCA   AC    TTT

miRNA cluster info.

No miRNA locus in ± 10k bp interval.

miRNA syntenic block

Syntenic block ID miRNA locus 1 miRNA locus 1 position Organism miRNA locus 2 miRNA locus 2 position
SY-202 Aly-MIR169f Aly-scaffold_3: 6024155-6024301 - Brassica rapa Bra-MIRN366 Bra-A01: 26728863-26729051 +
SY-566 Ath-MIR169f Ath-Chr3: 4805693-4805839 - Brassica rapa Bra-MIRN366 Bra-A01: 26728863-26729051 +
SY-1195 Bra-MIRN366 Bra-A01: 26728863-26729051 + Capsella rubella Cru-MIR169b Cru-scaffold_3: 4933472-4933619 -

Expression info.

Mature miRNA expression [+]

Reads per million (RPM)

star miRNA expression [+]

Reads per million (RPM)

Target gene info.[+]

Target gene ID psRNAtarget RNAhybrid PARE-Seq?

The first number (from 0-2) indicates the category of CleaveLand4 analysis result while the number in brackets displays the number of degradome libraries which verify the miRNA-target interaction. Click the number to download the selected figure of PARE-Seq reads distribution.

Brara.A00995.1 1.0 0 NA
Brara.I03213.1 1.5 NA NA

Mature miRNA conservation

?

Mature miRNA conservation

    Link

    Reference