PmiREN: Plant microRNA Encyclopedia

Cmo-MIR171a

Basic info.

miRNA locus ID
Cmo-MIR171a

miRNA locus accession
PmiREN005416

Organism
Cucurbita moschata

Genomic location
Cmo-NW_019268519.1 2575670 2575788 -

Comments
A member of family MIR171

Confidence level

Secondary strurture and sequence

mature sequence star sequence

5'

3'

  GTGCGAGACTCGGA   C          A            A  -  A       -  AA
                AAG GATATTGGTG GGTTCAATCGGA GA CG ATTTTAC CA  
                ||| |||||||||| |||||||||||| || || ||||||| ||   
                TTC CTATAACCGC CCGAGTTAGTCT CT GC TGAAATG GT  
AGGACCTTTATATTTT   A          G            -  A  A       T  TC

Get mature sequence
Get star sequence
Get miRNA stem-loop seqence
Get miRNA stem-loop ± 20bp
Get dot-bracket miRNA secondary structure
Get miRNA stem-loop ± 500bp
Get miRNA Promoter

miRNA cluster info.

Cluster ID: 3388
Chromosome: Cmo-NW_019268519.1
Cluster start: 2565927
Cluster end: 2575788

miRNA locus ID	miRNA locus accession	Chromosome	Strand	Start	End
Cmo-MIR171a , Cmo-MIR396b	PmiREN005416, PmiREN005454	Cmo-NW_019268519.1	-	2565927	2575788

miRNA syntenic block

No syntenic block.

Expression info.

Mature miRNA expression [+]

Reads per million (RPM)

star miRNA expression [+]

Reads per million (RPM)

Target gene info.[+]

Target gene ID	psRNAtarget	RNAhybrid	PARE-Seq? The first number (from 0-2) indicates the category of CleaveLand4 analysis result while the number in brackets displays the number of degradome libraries which verify the miRNA-target interaction. Click the number to download the selected figure of PARE-Seq reads distribution.
XM_023067629.1	0.0	NA	NA
XM_023087272.1	0.0	NA	NA
XM_023103388.1	0.0	NA	NA
XM_023108702.1	0.0	NA	NA
XM_023092290.1	1.5	2	NA

Mature miRNA conservation

Link

No link
No link

Reference

No reference

Cmo-MIR171a

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