Cmo-MIR396b

Basic info.

Secondary strurture and sequence

mature sequence    star sequence
5'



3'
  GGGAGGACCTG      TTT                 A    ---C  -T   TTT     TAA
             GCCATG   TTCCACAGCTTTCTTGA CTTC    TC  TTA   TCTTC   
             ||||||   ||||||||||||||||| ||||    ||  |||   |||||   T
             CGGTAC   AGGGTGTCGAAAGAACT GAAG    AG  AAT   AGAAG   
TCTTCGGACTTTA      TAC                 C    TTTT  CT   TTT     TCT

miRNA cluster info.

miRNA locus ID miRNA locus accession Chromosome Strand Start End
Cmo-MIR171a ,   Cmo-MIR396b PmiREN005416, PmiREN005454 Cmo-NW_019268519.1 - 2565927 2575788

miRNA syntenic block

No syntenic block.

Expression info.

Mature miRNA expression [+]

Reads per million (RPM)

star miRNA expression [+]

Reads per million (RPM)

Target gene info.[+]

Target gene ID psRNAtarget RNAhybrid PARE-Seq?

The first number (from 0-2) indicates the category of CleaveLand4 analysis result while the number in brackets displays the number of degradome libraries which verify the miRNA-target interaction. Click the number to download the selected figure of PARE-Seq reads distribution.

XM_023104739.1 2.0 NA NA
XM_023106651.1 2.0 NA NA
XR_002710056.1 2.0 2 NA
XR_002710814.1 2.0 2 NA
XR_002710815.1 2.0 2 NA
XR_002710816.1 2.0 2 NA
XR_002710817.1 2.0 2 NA
XR_002710818.1 2.0 2 NA
XR_002713582.1 2.0 2 NA
XR_002713583.1 2.0 2 NA

Mature miRNA conservation

?

Mature miRNA conservation

    Link

    Reference