PmiREN: Plant microRNA Encyclopedia

Egu-MIR171b

Basic info.

miRNA locus ID
Egu-MIR171b

miRNA locus accession
PmiREN005523

Organism
Erythranthe guttata

Genomic location
Egu-NW_012193250.1 4392475 4392621 +

Comments
A member of family MIR171

Confidence level

Secondary strurture and sequence

mature sequence star sequence

5'

3'

TTGGC    AT  T     T         T       C       TT    T TT    TA TCTACT   ACGAAA
     TGAA  AG CGTTA GGTGTTGGC CGGCTCA TCAGAGA  AAAA C  TATA  C      GCC      
     ||||  || ||||| ||||||||| ||||||| |||||||  |||| |  ||||  |      |||       
     ACTT  TC GTAAT CTATAACCG GCCGAGT AGTCTTT  TTTT G  ATAT  G      CGG      
  TTT    CT  C     T         C       T       --    - TT    TG --TAAT   AAAAAA

Get mature sequence
Get star sequence
Get miRNA stem-loop seqence
Get miRNA stem-loop ± 20bp
Get dot-bracket miRNA secondary structure
Get miRNA stem-loop ± 500bp
Get miRNA Promoter

miRNA cluster info.

Cluster ID: 3394
Chromosome: Egu-NW_012193250.1
Cluster start: 4392475
Cluster end: 4397635

miRNA locus ID	miRNA locus accession	Chromosome	Strand	Start	End
Egu-MIR171b , Egu-MIR394a	PmiREN005523, PmiREN005534	Egu-NW_012193250.1	+	4392475	4397635

miRNA syntenic block

No syntenic block.

Expression info.

Mature miRNA expression [+]

Reads per million (RPM)

star miRNA expression [+]

Reads per million (RPM)

Target gene info.[+]

Target gene ID	psRNAtarget	RNAhybrid	PARE-Seq? The first number (from 0-2) indicates the category of CleaveLand4 analysis result while the number in brackets displays the number of degradome libraries which verify the miRNA-target interaction. Click the number to download the selected figure of PARE-Seq reads distribution.
XM_012988114.1	0.0	NA	NA
XR_001173752.1	1.5	NA	NA

Mature miRNA conservation

Link

No link
No link

Reference

No reference

Egu-MIR171b

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