PmiREN: Plant microRNA Encyclopedia

Esa-MIR171a

Basic info.

miRNA locus ID
Esa-MIR171a

miRNA locus accession
PmiREN005629

Organism
Eutrema salsugineum

Genomic location
Esa-scaffold_6 36758 36858 -

Comments
A member of family MIR171

Confidence level

Secondary strurture and sequence

mature sequence star sequence

5'

3'

   TCC       TTTT  CT         C       C      CCTCTTT
      CGAGAGA    CT  GATATTGGC TGGTTCA TCAGAT       
      |||||||    ||  ||||||||| ||||||| ||||||       A
      GCTCTCT    GA  CTATAACCG GCCGAGT AGTCTA       
CCGTCT       -CCT  CT         T       T      CTAAATC

Get mature sequence
Get star sequence
Get miRNA stem-loop seqence
Get miRNA stem-loop ± 20bp
Get dot-bracket miRNA secondary structure
Get miRNA stem-loop ± 500bp
Get miRNA Promoter

miRNA cluster info.

Cluster ID:
Chromosome:
Cluster start:
Cluster end:

No miRNA locus in ± 10k bp interval.

miRNA syntenic block

Syntenic block ID	miRNA locus 1	miRNA locus 1 position	Organism	miRNA locus 2	miRNA locus 2 position
SY-223	Aly-MIR170	Aly-scaffold_8: 22899757-22899857 +	Eutrema salsugineum	Esa-MIR171a	Esa-scaffold_6: 36758-36858 -
SY-581	Ath-MIR170	Ath-Chr5: 26411574-26411675 -	Eutrema salsugineum	Esa-MIR171a	Esa-scaffold_6: 36758-36858 -

Expression info.

Mature miRNA expression [+]

Reads per million (RPM)

star miRNA expression [+]

Reads per million (RPM)

Target gene info.[+]

Target gene ID	psRNAtarget	RNAhybrid	PARE-Seq? The first number (from 0-2) indicates the category of CleaveLand4 analysis result while the number in brackets displays the number of degradome libraries which verify the miRNA-target interaction. Click the number to download the selected figure of PARE-Seq reads distribution.
Thhalv10001784m	0.5	0	NA
Thhalv10006506m	0.5	0	NA
Thhalv10029148m	0.5	0	NA
Thhalv10023133m	1.0	1	NA

Mature miRNA conservation

Link

No link
No link

Reference

No reference

Esa-MIR171a

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