PmiREN: Plant microRNA Encyclopedia

Esa-MIR171b

Basic info.

miRNA locus ID
Esa-MIR171b

miRNA locus accession
PmiREN005630

Organism
Eutrema salsugineum

Genomic location
Esa-scaffold_16 1985605 1985730 -

Comments
A member of family MIR171

Confidence level

Secondary strurture and sequence

mature sequence star sequence

5'

3'

     C    A     CC  TT         C       T      CT   T  CCACACAC   CAT
    G ACGA AGAGT  CT  GATATTGGC TGGTTCA TCAGAT  TCT GA        GCA   
    | |||| |||||  ||  ||||||||| ||||||| ||||||  ||| ||        |||   A
    C TGCT TCTCG  GA  CTATAACCG GCCGAGT AGTCTA  AGA CT        CGT   
CTCT -    C     -T  CC         C       T      -T   T  ----CTTA   TAT

Get mature sequence
Get star sequence
Get miRNA stem-loop seqence
Get miRNA stem-loop ± 20bp
Get dot-bracket miRNA secondary structure
Get miRNA stem-loop ± 500bp
Get miRNA Promoter

miRNA cluster info.

Cluster ID:
Chromosome:
Cluster start:
Cluster end:

No miRNA locus in ± 10k bp interval.

miRNA syntenic block

Syntenic block ID	miRNA locus 1	miRNA locus 1 position	Organism	miRNA locus 2	miRNA locus 2 position
SY-585	Ath-MIR171a	Ath-Chr3: 19073432-19073561 +	Eutrema salsugineum	Esa-MIR171b	Esa-scaffold_16: 1985605-1985730 -
SY-1055	Bra-MIR171f	Bra-A01: 12690698-12690814 -	Eutrema salsugineum	Esa-MIR171b	Esa-scaffold_16: 1985605-1985730 -
SY-1235	Cru-MIR171a	Cru-scaffold_5: 9180071-9180215 +	Eutrema salsugineum	Esa-MIR171b	Esa-scaffold_16: 1985605-1985730 -

Expression info.

Mature miRNA expression [+]

Reads per million (RPM)

star miRNA expression [+]

Reads per million (RPM)

Target gene info.[+]

Target gene ID	psRNAtarget	RNAhybrid	PARE-Seq? The first number (from 0-2) indicates the category of CleaveLand4 analysis result while the number in brackets displays the number of degradome libraries which verify the miRNA-target interaction. Click the number to download the selected figure of PARE-Seq reads distribution.
Thhalv10001784m	0.0	0	NA
Thhalv10006506m	0.0	0	NA
Thhalv10029148m	0.0	0	NA

Mature miRNA conservation

Link

No link
No link

Reference

No reference

Esa-MIR171b

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