Bra-MIR171f

Basic info.

Secondary strurture and sequence

mature sequence    star sequence
5'



3'
    C    A     CCC  TT         C       T      CT  TTGAACCATATA
     ACGA AGAGT   CT  GATATTGGC TGGTTCA TCAGAT  TC            
     |||| |||||   ||  ||||||||| ||||||| ||||||  ||             
     TGCT TCTCG   GA  CTATAACCG GCCGAGT AGTCTA  AG            
CTAGA    C     --T  CT         C       T      -T  TTTCTCTTACGT

miRNA cluster info.

No miRNA locus in ± 10k bp interval.

miRNA syntenic block

Syntenic block ID miRNA locus 1 miRNA locus 1 position Organism miRNA locus 2 miRNA locus 2 position
SY-227 Aly-MIR171a Aly-scaffold_5: 15611102-15611233 + Brassica rapa Bra-MIR171f Bra-A01: 12690698-12690814 -
SY-583 Ath-MIR171a Ath-Chr3: 19073432-19073561 + Brassica rapa Bra-MIR171f Bra-A01: 12690698-12690814 -
SY-1054 Bra-MIR171f Bra-A01: 12690698-12690814 - Brassica rapa Bra-MIR171e Bra-A03: 22995436-22995560 +
SY-1055 Bra-MIR171f Bra-A01: 12690698-12690814 - Eutrema salsugineum Esa-MIR171b Esa-scaffold_16: 1985605-1985730 -

Expression info.

Mature miRNA expression [+]

Reads per million (RPM)

star miRNA expression [+]

Reads per million (RPM)

Target gene info.[+]

Target gene ID psRNAtarget RNAhybrid PARE-Seq?

The first number (from 0-2) indicates the category of CleaveLand4 analysis result while the number in brackets displays the number of degradome libraries which verify the miRNA-target interaction. Click the number to download the selected figure of PARE-Seq reads distribution.

Brara.C02285.1 0.0 NA NA
Brara.C04364.1 0.0 0 NA
Brara.D00148.1 0.0 NA NA
Brara.G01771.1 0.0 NA NA
Brara.I00017.1 0.0 NA NA

Mature miRNA conservation

?

Mature miRNA conservation

    Link

    Reference