PmiREN: Plant microRNA Encyclopedia

Ghi-MIR477d

Basic info.

miRNA locus ID
Ghi-MIR477d

miRNA locus accession
PmiREN008616

Organism
Gossypium hirsutum

Genomic location
Ghi-NC_030093.1 11770238 11770376 +

Comments
A member of family MIR477

Confidence level

Secondary strurture and sequence

mature sequence star sequence

5'

3'

AAT       ----TT      T           --         C    -   GACA      G   TA  TTAA
   CAAGGCG      TCTCGT CACTCTCCCTC  AAGGGCTTC CCAA CAT    TGCATG TGC  GC    
   |||||||      |||||| |||||||||||  ||||||||| |||| |||    |||||| |||  ||     
   GTTCTGT      AGAGTA GTGGGGGGGGG  TTCCTGAAG GGTT GTA    ACGTAT ACG  CG    
  T       TATTAC      C           GA         C    C   ---A      -   TC  TCGT

Get mature sequence
Get star sequence
Get miRNA stem-loop seqence
Get miRNA stem-loop ± 20bp
Get dot-bracket miRNA secondary structure
Get miRNA stem-loop ± 500bp
Get miRNA Promoter

miRNA cluster info.

Cluster ID: 3578
Chromosome: Ghi-NC_030093.1
Cluster start: 11770238
Cluster end: 11775249

miRNA locus ID	miRNA locus accession	Chromosome	Strand	Start	End
Ghi-MIR477d , Ghi-MIR477i	PmiREN008616, PmiREN008621	Ghi-NC_030093.1	+	11770238	11775249

miRNA syntenic block

No syntenic block.

Expression info.

Mature miRNA expression [+]

Reads per million (RPM)

star miRNA expression [+]

Reads per million (RPM)

Target gene info.[+]

Target gene ID	psRNAtarget	RNAhybrid	PARE-Seq? The first number (from 0-2) indicates the category of CleaveLand4 analysis result while the number in brackets displays the number of degradome libraries which verify the miRNA-target interaction. Click the number to download the selected figure of PARE-Seq reads distribution.
Gohir.A09G245400.1	1.5	1	NA
Gohir.D09G246300.1	1.5	1	NA

Mature miRNA conservation

Link

No link
No link

Reference

No reference

Ghi-MIR477d

>