PmiREN: Plant microRNA Encyclopedia

Ghi-MIR477i

Basic info.

miRNA locus ID
Ghi-MIR477i

miRNA locus accession
PmiREN008621

Organism
Gossypium hirsutum

Genomic location
Ghi-NC_030093.1 11775121 11775249 +

Comments
A member of family MIR477

Confidence level

Secondary strurture and sequence

mature sequence star sequence

5'

3'

 AAT     -   T                 C         C    -   -G     CATG     TT
    CAAGG AGT TCTCATTCACTCTCCCT AAGGGCTTC CCAA CAT  CCATG    GGGGC  
    ||||| ||| ||||||||||||||||| ||||||||| |||| |||  |||||    |||||  G
    GTTCT TTA AGAGTAGGTGGGGGGGA TTCCTGAAG GGTT GTA  GGTAT    CTTCG  
GTAC     G   C                 -         T    C   AA     ---A     TA

Get mature sequence
Get star sequence
Get miRNA stem-loop seqence
Get miRNA stem-loop ± 20bp
Get dot-bracket miRNA secondary structure
Get miRNA stem-loop ± 500bp
Get miRNA Promoter

miRNA cluster info.

Cluster ID: 3578
Chromosome: Ghi-NC_030093.1
Cluster start: 11770238
Cluster end: 11775249

miRNA locus ID	miRNA locus accession	Chromosome	Strand	Start	End
Ghi-MIR477d , Ghi-MIR477i	PmiREN008616, PmiREN008621	Ghi-NC_030093.1	+	11770238	11775249

miRNA syntenic block

No syntenic block.

Expression info.

Mature miRNA expression [+]

Reads per million (RPM)

star miRNA expression [+]

Reads per million (RPM)

Target gene info.[+]

Target gene ID	psRNAtarget	RNAhybrid	PARE-Seq? The first number (from 0-2) indicates the category of CleaveLand4 analysis result while the number in brackets displays the number of degradome libraries which verify the miRNA-target interaction. Click the number to download the selected figure of PARE-Seq reads distribution.
Gohir.A09G245400.1	1.5	NA	NA
Gohir.D09G246300.1	1.5	NA	NA

Mature miRNA conservation

Link

No link
No link

Reference

No reference

Ghi-MIR477i

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