Hsy-MIR171f

Basic info.

• miRNA locus ID
• Hsy-MIR171f

• miRNA locus accession
• PmiREN009418

• Organism
• Hibiscus syriacus

• Genomic location
• Hsy-MBGJ01004102.1  9152  9280  +

• Comments
• A member of family MIR171

• Confidence level
• 

Secondary strurture and sequence

GGGAAGC   --    -------A     C          A         C  A  -  -GA     -  A  GA
       AAA  AGAA        GAAAG GATGTTGGTG GGTTCAATC GA GA CG   TTTAC GC TG  
       |||  ||||        ||||| |||||||||| ||||||||| || || ||   ||||| || ||   
       TTT  TCTT        CTTTC CTATAACCGC CCGAGTTAG CT CT GC   AAATG CG GC  
          TA    CCTTACAC     A          G         A  -  A  ATA     T  -  TT

• Get mature sequence
• Get star sequence
• Get miRNA stem-loop seqence
• Get miRNA stem-loop ± 20bp
• Get dot-bracket miRNA secondary structure
• Get miRNA stem-loop ± 500bp
• Get miRNA Promoter

miRNA cluster info.

• Cluster ID: 3619
• Chromosome: Hsy-MBGJ01004102.1
• Cluster start: 9152
• Cluster end: 17187

miRNA syntenic block

Expression info.

Mature miRNA expression [+]

star miRNA expression [+]

Target gene info.[+]

Link

• No link
• No link

Reference

• No reference