Hsy-MIR396s

Basic info.

• miRNA locus ID
• Hsy-MIR396s

• miRNA locus accession
• PmiREN009617

• Organism
• Hibiscus syriacus

• Genomic location
• Hsy-MBGJ01004102.1  17052  17187  +

• Comments
• A member of family MIR396

• Confidence level
• 

Secondary strurture and sequence

AAATG      -------      C                   A   CCTTTGTATTCAT     -CCGCCTG    GTA
     GTCCTG       GTCATG TTTTCCACAGCTTTCTTGA CTT             TCATG        ATAT   
     ||||||       |||||| ||||||||||||||||||| |||             |||||        ||||    
     CAGGAC       TAGTAC AGAGGGTGTCGAAAGAACT GAA             AGTAC        TATG   
           TTAACGG      A                   C   -------------     CAAAACGA    ATA

• Get mature sequence
• Get star sequence
• Get miRNA stem-loop seqence
• Get miRNA stem-loop ± 20bp
• Get dot-bracket miRNA secondary structure
• Get miRNA stem-loop ± 500bp
• Get miRNA Promoter

miRNA cluster info.

• Cluster ID: 3619
• Chromosome: Hsy-MBGJ01004102.1
• Cluster start: 9152
• Cluster end: 17187

miRNA syntenic block

Expression info.

Mature miRNA expression [+]

star miRNA expression [+]

Target gene info.[+]

Link

• No link
• No link

Reference

• >Small RNA Transcriptome of Hibiscus Syriacus Provides Insights into the Potential Influence of microRNAs in Flower Development and Terpene Synthesis. Mol Cells, 2017