PmiREN: Plant microRNA Encyclopedia

Mtr-MIR171d

Basic info.

miRNA locus ID
Mtr-MIR171d

miRNA locus accession
PmiREN011394

Organism
Medicago truncatula

Genomic location
Mtr-chr2 8261767 8262028 -

Comments
A member of family MIR171

Confidence level

Secondary strurture and sequence

mature sequence star sequence

5'

3'

TTATTCTAAAGTTCTCTTAT       -   CGTG     A       T   ---TA     -     CTTTA  TATCAATTTGCAGCACATGAAAGGGACAAAGGTTAAAATTATTTCATTGCTTTTCATTTG
                    TTGATTG AGC    CCAAT TCACATG AAC     TCTAT CTCAT     GC                                                            
                    ||||||| |||    ||||| ||||||| |||     ||||| |||||     ||                                                            T
                    AACTAAT TTG    GGTTG AGTGTAT TTG     GGATA GAGTA     AA                                                            
            GGTTCTTT       A   ---A     A       T   TATAC     C     ---CT  GTAGACGTTTTCTTTTTTGGAGTTAATGATCATCAGAACTTGATTTTTGTAACTGCGTAT

Get mature sequence
Get star sequence
Get miRNA stem-loop seqence
Get miRNA stem-loop ± 20bp
Get dot-bracket miRNA secondary structure
Get miRNA stem-loop ± 500bp
Get miRNA Promoter

miRNA cluster info.

Cluster ID:
Chromosome:
Cluster start:
Cluster end:

No miRNA locus in ± 10k bp interval.

miRNA syntenic block

Syntenic block ID	miRNA locus 1	miRNA locus 1 position	Organism	miRNA locus 2	miRNA locus 2 position
SY-1310	Gma-MIR171f	Gma-Gm15: 8464103-8464218 -	Medicago truncatula	Mtr-MIR171d	Mtr-chr2: 8261767-8262028 -
SY-1313	Gma-MIR171q	Gma-Gm17: 1007454-1007571 +	Medicago truncatula	Mtr-MIR171d	Mtr-chr2: 8261767-8262028 -
SY-1378	Mtr-MIR171d	Mtr-chr2: 8261767-8262028 -	Medicago truncatula	Mtr-MIR171j	Mtr-chr4: 55239583-55239700 -

Expression info.

Mature miRNA expression [+]

Reads per million (RPM)

star miRNA expression [+]

Reads per million (RPM)

Target gene info.[+]

Target gene ID	psRNAtarget	RNAhybrid	PARE-Seq? The first number (from 0-2) indicates the category of CleaveLand4 analysis result while the number in brackets displays the number of degradome libraries which verify the miRNA-target interaction. Click the number to download the selected figure of PARE-Seq reads distribution.
Medtr0092s0100.2	1.5	NA	NA
Medtr7g026973.1	2.0	2	NA

Mature miRNA conservation

Link

No link
No link

Reference

>Identification of Arbuscular Mycorrhiza (AM)-Responsive microRNAs in Tomato. Front Plant Sci, 2016

>Two direct targets of cytokinin signaling regulate symbiotic nodulation in Medicago truncatula. Plant Cell, 2012

>Distribution pattern of small RNA and degradome reads provides information on miRNA gene structure and regulation. Plant Signal Behav, 2011