Mac-MIR171g

Basic info.

Secondary strurture and sequence

mature sequence    star sequence
5'



3'
   CC      C   C    T         C              A   CCACC   CA  G  AAG
     ATGAAA AGT ACTA GATGTTGGC CGGCTCGATCAGAA GCA     ATG  CG CT   
     |||||| ||| |||| ||||||||| |||||||||||||| |||     |||  || ||   C
     TGCTTT TCA TGAT CTATAACCG GCCGAGTTAGTCTT CGT     TAC  GC GA   
ATTCT      -   A    T         C              A   -CACC   -A  A  AAA

miRNA cluster info.

miRNA locus ID miRNA locus accession Chromosome Strand Start End
Mac-MIR171g ,   Mac-MIR394d PmiREN012122, PmiREN012177 Mac-chr5 + 8268741 8277709

miRNA syntenic block

No syntenic block.

Expression info.

Mature miRNA expression [+]

Reads per million (RPM)

star miRNA expression [+]

Reads per million (RPM)

Target gene info.[+]

Target gene ID psRNAtarget RNAhybrid PARE-Seq?

The first number (from 0-2) indicates the category of CleaveLand4 analysis result while the number in brackets displays the number of degradome libraries which verify the miRNA-target interaction. Click the number to download the selected figure of PARE-Seq reads distribution.

GSMUA_Achr11T04360_001 0.0 NA NA
GSMUA_Achr1T05940_001 0.0 0 NA
GSMUA_Achr5T20860_001 0.0 NA NA
GSMUA_Achr6T36740_001 0.0 0 NA
GSMUA_Achr8T11160_001 0.0 NA NA
GSMUA_Achr3T29970_001 1.0 1 NA
GSMUA_Achr4T03460_001 1.0 1 NA
GSMUA_Achr4T07190_001 1.0 1 NA
GSMUA_Achr11T21080_001 1.5 NA NA

Mature miRNA conservation

?

Mature miRNA conservation

    Link

    Reference