PmiREN: Plant microRNA Encyclopedia

Mac-MIR394d

Basic info.

miRNA locus ID
Mac-MIR394d

miRNA locus accession
PmiREN012177

Organism
Musa acuminata

Genomic location
Mac-chr5 8277589 8277709 +

Comments
A member of family MIR394

Confidence level

Secondary strurture and sequence

mature sequence star sequence

5'

3'

 AGGGTTGCTT      G   -      TTC            -AATCATCCA    CCATG
           GCAGAG TTA TTGGCA   TGTCCACCTCCA          TCTC     
           |||||| ||| ||||||   ||||||||||||          ||||      
           CGTCTC AGT AACCGT   ACGGGTGGAGGT          AGAG     
TTCTCTTCGAT      A   C      CCT            AGACATTCGA    AACAA

Get mature sequence
Get star sequence
Get miRNA stem-loop seqence
Get miRNA stem-loop ± 20bp
Get dot-bracket miRNA secondary structure
Get miRNA stem-loop ± 500bp
Get miRNA Promoter

miRNA cluster info.

Cluster ID: 3813
Chromosome: Mac-chr5
Cluster start: 8268741
Cluster end: 8277709

miRNA locus ID	miRNA locus accession	Chromosome	Strand	Start	End
Mac-MIR171g , Mac-MIR394d	PmiREN012122, PmiREN012177	Mac-chr5	+	8268741	8277709

miRNA syntenic block

No syntenic block.

Expression info.

Mature miRNA expression [+]

Reads per million (RPM)

star miRNA expression [+]

Reads per million (RPM)

Target gene info.[+]

Target gene ID	psRNAtarget	RNAhybrid	PARE-Seq? The first number (from 0-2) indicates the category of CleaveLand4 analysis result while the number in brackets displays the number of degradome libraries which verify the miRNA-target interaction. Click the number to download the selected figure of PARE-Seq reads distribution.
GSMUA_AchrUn_randomT00910_001	0.0	NA	NA

Mature miRNA conservation

Link

No link
No link

Reference

No reference

Mac-MIR394d

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