Oni-MIR171c

Basic info.

• miRNA locus ID
• Oni-MIR171c

• miRNA locus accession
• PmiREN013762

• Organism
• Oryza nivara

• Genomic location
• Oni-3  1642738  1642874  +

• Comments
• A member of family MIR171

• Confidence level
• 

Secondary strurture and sequence

   GA      T    G   T         T       C     C     TGGC    T  GA    T   TG
     ATGAAA GGTA CTA GATGTTGGC CGGCTCA TCAGA GGCAT    GTGA GC  AGCA GCA  
     |||||| |||| ||| ||||||||| ||||||| ||||| |||||    |||| ||  |||| |||   
     TACTTT TCGT GAT CTATAACCG GCCGAGT AGTCT TTGTG    CACT CG  TCGT CGT  
ATGTG      C    -   T         T       T     -     --TT    -  -A    T   GC

• Get mature sequence
• Get star sequence
• Get miRNA stem-loop seqence
• Get miRNA stem-loop ± 20bp
• Get dot-bracket miRNA secondary structure
• Get miRNA stem-loop ± 500bp
• Get miRNA Promoter

miRNA cluster info.

• Cluster ID: 
• Chromosome: 
• Cluster start: 
• Cluster end: 

miRNA syntenic block

Expression info.

Mature miRNA expression [+]

star miRNA expression [+]

Target gene info.[+]

Link

• No link
• No link

Reference

• No reference