Smo-MIR171e

Basic info.

• miRNA locus ID
• Smo-MIR171e

• miRNA locus accession
• PmiREN018549

• Organism
• Selaginella moellendorffii

• Genomic location
• Smo-scaffold_18  1217682  1217806  -

• Comments
• A member of family MIR171

• Confidence level
• 

Secondary strurture and sequence

   CTAAATTGTG   G     --         A  A       T A   T   A     CTCGA
             AGT TGTCT  GTGATATTG CA GGCTCAA C GGC GCA TGCTA     
             ||| |||||  ||||||||| || ||||||| | ||| ||| |||||     G
             TCG ATAGA  CACTATAAC GT CCGAGTT G CCG CGT GTGAT     
CCTTCTGTACCGA   -     TA         C  G       C A   T   A     TAATC

• Get mature sequence
• Get star sequence
• Get miRNA stem-loop seqence
• Get miRNA stem-loop ± 20bp
• Get dot-bracket miRNA secondary structure
• Get miRNA stem-loop ± 500bp
• Get miRNA Promoter

miRNA cluster info.

• Cluster ID: 4091
• Chromosome: Smo-scaffold_18
• Cluster start: 1210655
• Cluster end: 1217806

miRNA syntenic block

Expression info.

Mature miRNA expression [+]

star miRNA expression [+]

Target gene info.[+]

Link

• No link
• Link To PNDB

Reference

• No reference