Smo-MIR171f

Basic info.

Secondary strurture and sequence

mature sequence    star sequence
5'



3'
      AAATATATG     T            GA         CA  T      C    CAA
   GGG         CGAGG ATGTGATATTGG  TGGCTCAAT  GA GGCGTT GCTG   
   |||         ||||| ||||||||||||  |||||||||  || |||||| ||||   T
   CTC         GTTCC TACACTATAACC  GCCGAGTTA  CT TCGCGA CGAC   
CTT   CAAAAAAAG     -            GC         AA  C      C    TCG

miRNA cluster info.

miRNA locus ID miRNA locus accession Chromosome Strand Start End
Smo-MIR171e ,   Smo-MIR171f PmiREN018549, PmiREN018551 Smo-scaffold_18 - 1210655 1217806

miRNA syntenic block

No syntenic block.

Expression info.

Mature miRNA expression [+]

Reads per million (RPM)

star miRNA expression [+]

Reads per million (RPM)

Target gene info.[+]

Target gene ID psRNAtarget RNAhybrid PARE-Seq?

The first number (from 0-2) indicates the category of CleaveLand4 analysis result while the number in brackets displays the number of degradome libraries which verify the miRNA-target interaction. Click the number to download the selected figure of PARE-Seq reads distribution.

413836 2.0 2 NA
431654 2.0 2 NA
444260 2.0 NA NA

Mature miRNA conservation

?

Mature miRNA conservation

    Link

    Reference