Bra-MIR165d

Basic info.

Secondary strurture and sequence

mature sequence    star sequence
5'



3'
 TGAA  T  TT  -    A    A   TT      A         TTA        CAAATATGTA        -    TATC
     GT AT  CA GTTG GGGG ATG  GTCTGG TCGAGGATA   TATATACA          TATATATG TTAA    
     || ||  || |||| |||| |||  |||||| |||||||||   ||||||||          |||||||| ||||    A
     CG TA  GT CAAT CCCC TAC  CGGACC GGCTCTTAT   ATATATGT          ATATATAC AGTT    
GTCTC  T  TT  A    C    C   TT      A         TAG        ----------        T    TGTG

miRNA cluster info.

No miRNA locus in ± 10k bp interval.

miRNA syntenic block

Syntenic block ID miRNA locus 1 miRNA locus 1 position Organism miRNA locus 2 miRNA locus 2 position
SY-103 Aly-MIR165a Aly-scaffold_1: 449084-449219 + Brassica rapa Bra-MIR165d Bra-A10: 341341-341496 +
SY-488 Ath-MIR165a Ath-Chr1: 78912-79050 - Brassica rapa Bra-MIR165d Bra-A10: 341341-341496 +
SY-768 Bol-MIR165a Bol-C05: 281079-281228 + Brassica rapa Bra-MIR165d Bra-A10: 341341-341496 +
SY-771 Bol-MIR165b Bol-C08: 41197079-41197233 - Brassica rapa Bra-MIR165d Bra-A10: 341341-341496 +
SY-958 Bra-MIR165b Bra-A09: 44653661-44653815 - Brassica rapa Bra-MIR165d Bra-A10: 341341-341496 +
SY-961 Bra-MIR165d Bra-A10: 341341-341496 + Eutrema salsugineum Esa-MIR165 Esa-scaffold_5: 15258725-15258867 -

Expression info.

Mature miRNA expression [+]

Reads per million (RPM)

star miRNA expression [+]

Reads per million (RPM)

Target gene info.[+]

Target gene ID psRNAtarget RNAhybrid PARE-Seq?

The first number (from 0-2) indicates the category of CleaveLand4 analysis result while the number in brackets displays the number of degradome libraries which verify the miRNA-target interaction. Click the number to download the selected figure of PARE-Seq reads distribution.

Brara.B01017.1 0.5 NA NA
Brara.D02105.1 0.5 NA NA
Brara.I02808.1 0.5 NA NA
Brara.J01422.1 0.5 NA NA
Brara.K00217.1 0.5 NA NA
Brara.E00955.1 1.5 NA NA
Brara.F00211.1 1.5 NA NA
Brara.F01856.1 1.5 NA NA
Brara.H00179.1 1.5 NA NA

Mature miRNA conservation

?

Mature miRNA conservation

    Link

    Reference