Bra-MIR390a

Basic info.

• miRNA locus ID
• Bra-MIR390a

• miRNA locus accession
• PmiREN002502

• Organism
• Brassica rapa

• Genomic location
• Bra-A04  18745229  18745339  +

• Comments
• A member of family MIR390

• Confidence level
• 

Secondary strurture and sequence

AAA    --      A  T  A          G           TC TG   ACAC
   GTAG  AGAAGA TC GT AAGCTCAGGA GGATAGCGCCA  A  ATC    
   ||||  |||||| || || |||||||||| |||||||||||  |  |||    A
   CATC  TCTTCT GG TA TTTGAGTCCT CCTGTCGCGGT  T  TAG    
TAA    AT      C  T  C          A           TT TA   CTAC

• Get mature sequence
• Get star sequence
• Get miRNA stem-loop seqence
• Get miRNA stem-loop ± 20bp
• Get dot-bracket miRNA secondary structure
• Get miRNA stem-loop ± 500bp
• Get miRNA Promoter

miRNA cluster info.

• Cluster ID: 
• Chromosome: 
• Cluster start: 
• Cluster end: 

miRNA syntenic block

Expression info.

Mature miRNA expression [+]

star miRNA expression [+]

Target gene info.[+]

Link

• Link To miRbase
• Link To PNDB

Reference

• No reference