PmiREN: Plant microRNA Encyclopedia

Cru-MIR168a

Basic info.

miRNA locus ID
Cru-MIR168a

miRNA locus accession
PmiREN002767

Organism
Capsella rubella

Genomic location
Cru-scaffold_7 8258806 8258945 -

Comments
A member of family MIR168

Confidence level

Secondary strurture and sequence

mature sequence star sequence

5'

3'

 TC     -GTC      G      C          T     A       --G       -T      TCTC
   TCACG    GGGCTC GATTCG TTGGTGCAGG CGGGA CCAATTT   GCTGACG  GAGTCG    
   |||||    |||||| |||||| |||||||||| ||||| |||||||   |||||||  ||||||    T
   AGTGC    CCCGAG CTAAGT AACTACGTTC GCCCT GGTTAGG   CGACTGT  TTTGGT    
ATA     AGCT      G      C          C     A       AGA       GT      TATT

Get mature sequence
Get star sequence
Get miRNA stem-loop seqence
Get miRNA stem-loop ± 20bp
Get dot-bracket miRNA secondary structure
Get miRNA stem-loop ± 500bp
Get miRNA Promoter

miRNA cluster info.

Cluster ID:
Chromosome:
Cluster start:
Cluster end:

No miRNA locus in ± 10k bp interval.

miRNA syntenic block

Syntenic block ID	miRNA locus 1	miRNA locus 1 position	Organism	miRNA locus 2	miRNA locus 2 position
SY-175	Aly-MIR168a	Aly-scaffold_7: 10245612-10245757 -	Capsella rubella	Cru-MIR168a	Cru-scaffold_7: 8258806-8258945 -
SY-184	Aly-MIR168b	Aly-scaffold_8: 2067209-2067339 +	Capsella rubella	Cru-MIR168a	Cru-scaffold_7: 8258806-8258945 -
SY-542	Ath-MIR168a	Ath-Chr4: 10578632-10578777 +	Capsella rubella	Cru-MIR168a	Cru-scaffold_7: 8258806-8258945 -
SY-550	Ath-MIR168b	Ath-Chr5: 18358783-18358913 -	Capsella rubella	Cru-MIR168a	Cru-scaffold_7: 8258806-8258945 -
SY-816	Bol-MIR168b	Bol-C07: 41430765-41430906 +	Capsella rubella	Cru-MIR168a	Cru-scaffold_7: 8258806-8258945 -
SY-820	Bol-MIR168c	Bol-C09: 7067563-7067703 -	Capsella rubella	Cru-MIR168a	Cru-scaffold_7: 8258806-8258945 -
SY-996	Bra-MIR168b	Bra-A01: 5436066-5436205 +	Capsella rubella	Cru-MIR168a	Cru-scaffold_7: 8258806-8258945 -
SY-999	Bra-MIR168c	Bra-Scaffold87669: 166114-166244 +	Capsella rubella	Cru-MIR168a	Cru-scaffold_7: 8258806-8258945 -
SY-1001	Bra-MIR168d	Bra-A08: 12072881-12073020 -	Capsella rubella	Cru-MIR168a	Cru-scaffold_7: 8258806-8258945 -
SY-1003	Bra-MIR168f	Bra-A09: 13356294-13356434 -	Capsella rubella	Cru-MIR168a	Cru-scaffold_7: 8258806-8258945 -
SY-1227	Cru-MIR168a	Cru-scaffold_7: 8258806-8258945 -	Capsella rubella	Cru-MIR168b	Cru-scaffold_8: 1121379-1121509 +
SY-1228	Cru-MIR168a	Cru-scaffold_7: 8258806-8258945 -	Eutrema salsugineum	Esa-MIR168b	Esa-scaffold_1: 8872731-8872872 -
SY-1229	Cru-MIR168a	Cru-scaffold_7: 8258806-8258945 -	Eutrema salsugineum	Esa-MIR168c	Esa-scaffold_20: 1047212-1047352 -

Expression info.

Mature miRNA expression [+]

Reads per million (RPM)

star miRNA expression [+]

Reads per million (RPM)

Target gene info.[+]

No target gene.

Mature miRNA conservation

Link

No link
No link

Reference

No reference

Cru-MIR168a

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