Cru-MIR319b

Basic info.

• miRNA locus ID
• Cru-MIR319b

• miRNA locus accession
• PmiREN002785

• Organism
• Capsella rubella

• Genomic location
• Cru-scaffold_7  6507492  6507703  -

• Comments
• A member of family MIR319

• Confidence level
• 

Secondary strurture and sequence

 ATAG      -ATGTAC    A          G      T   C   TC  G T           A -  T   AC        C  AA  C       --CA   AA
     GAATAT       GGAG GAGCTTCCTT AGTCCA TCA AGG  GT A ATGATCCAATT G CT CCG  TCATTCAT CA  TA CGAGTCT    CCA  
     ||||||       |||| |||||||||| |||||| ||| |||  || | ||||||||||| | || |||  |||||||| ||  || |||||||    |||   
     CTTATG       TTTC CTCGAGGGAA TCAGGT AGT TCT  TA T TACTAGGTTAA C GA GGC  AGTAAGTA GT  AT GTTCAGA    GGT  
TTAGC      GTTCTTC    C          G      T   T   CT  G -           A A  T   GT        A  AA  T       ACAA   TA

• Get mature sequence
• Get star sequence
• Get miRNA stem-loop seqence
• Get miRNA stem-loop ± 20bp
• Get dot-bracket miRNA secondary structure
• Get miRNA stem-loop ± 500bp
• Get miRNA Promoter

miRNA cluster info.

• Cluster ID: 
• Chromosome: 
• Cluster start: 
• Cluster end: 

miRNA syntenic block

Expression info.

Mature miRNA expression [+]

star miRNA expression [+]

Target gene info.[+]

Link

• No link
• No link

Reference

• >Microsynteny analysis to understand evolution and impact of polyploidization on MIR319 family within Brassicaceae. Dev Genes Evol, 2018
• >Comparative analysis of the MIR319a microRNA locus in Arabidopsis and related Brassicaceae. Mol Biol Evol, 2008