PmiREN: Plant microRNA Encyclopedia

Esa-MIR168b

Basic info.

miRNA locus ID
Esa-MIR168b

miRNA locus accession
PmiREN005622

Organism
Eutrema salsugineum

Genomic location
Esa-scaffold_1 8872731 8872872 -

Comments
A member of family MIR168

Confidence level

Secondary strurture and sequence

mature sequence star sequence

5'

3'

 AG      T  -     G      C          T     A      --    G   C     CGT   TT
   TCACCG CG GGCTC GATTCG TTGGTGCAGG CGGGA CTAATT  TGCT ACA GGCCA   GAG  
   |||||| || ||||| |||||| |||||||||| ||||| ||||||  |||| ||| |||||   |||  T
   AGTGGC GC CCGAG CTAAGT AACTACGTTC GCCCT GGTTAG  ACGA TGT TTGGT   TTC  
TAA      C  T     G      C          C     A      GG    G   -     TGT   CT

Get mature sequence
Get star sequence
Get miRNA stem-loop seqence
Get miRNA stem-loop ± 20bp
Get dot-bracket miRNA secondary structure
Get miRNA stem-loop ± 500bp
Get miRNA Promoter

miRNA cluster info.

Cluster ID:
Chromosome:
Cluster start:
Cluster end:

No miRNA locus in ± 10k bp interval.

miRNA syntenic block

Syntenic block ID	miRNA locus 1	miRNA locus 1 position	Organism	miRNA locus 2	miRNA locus 2 position
SY-177	Aly-MIR168a	Aly-scaffold_7: 10245612-10245757 -	Eutrema salsugineum	Esa-MIR168b	Esa-scaffold_1: 8872731-8872872 -
SY-186	Aly-MIR168b	Aly-scaffold_8: 2067209-2067339 +	Eutrema salsugineum	Esa-MIR168b	Esa-scaffold_1: 8872731-8872872 -
SY-544	Ath-MIR168a	Ath-Chr4: 10578632-10578777 +	Eutrema salsugineum	Esa-MIR168b	Esa-scaffold_1: 8872731-8872872 -
SY-552	Ath-MIR168b	Ath-Chr5: 18358783-18358913 -	Eutrema salsugineum	Esa-MIR168b	Esa-scaffold_1: 8872731-8872872 -
SY-817	Bol-MIR168b	Bol-C07: 41430765-41430906 +	Eutrema salsugineum	Esa-MIR168b	Esa-scaffold_1: 8872731-8872872 -
SY-997	Bra-MIR168b	Bra-A01: 5436066-5436205 +	Eutrema salsugineum	Esa-MIR168b	Esa-scaffold_1: 8872731-8872872 -
SY-1000	Bra-MIR168c	Bra-Scaffold87669: 166114-166244 +	Eutrema salsugineum	Esa-MIR168b	Esa-scaffold_1: 8872731-8872872 -
SY-1002	Bra-MIR168d	Bra-A08: 12072881-12073020 -	Eutrema salsugineum	Esa-MIR168b	Esa-scaffold_1: 8872731-8872872 -
SY-1005	Bra-MIR168f	Bra-A09: 13356294-13356434 -	Eutrema salsugineum	Esa-MIR168b	Esa-scaffold_1: 8872731-8872872 -
SY-1228	Cru-MIR168a	Cru-scaffold_7: 8258806-8258945 -	Eutrema salsugineum	Esa-MIR168b	Esa-scaffold_1: 8872731-8872872 -
SY-1230	Cru-MIR168b	Cru-scaffold_8: 1121379-1121509 +	Eutrema salsugineum	Esa-MIR168b	Esa-scaffold_1: 8872731-8872872 -
SY-1268	Esa-MIR168b	Esa-scaffold_1: 8872731-8872872 -	Eutrema salsugineum	Esa-MIR168c	Esa-scaffold_20: 1047212-1047352 -

Expression info.

Mature miRNA expression [+]

Reads per million (RPM)

star miRNA expression [+]

Reads per million (RPM)

Target gene info.[+]

No target gene.

Mature miRNA conservation

Link

No link
No link

Reference

No reference

Esa-MIR168b

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