PmiREN: Plant microRNA Encyclopedia

Esa-MIR168c

Basic info.

miRNA locus ID
Esa-MIR168c

miRNA locus accession
PmiREN005623

Organism
Eutrema salsugineum

Genomic location
Esa-scaffold_20 1047212 1047352 -

Comments
A member of family MIR168

Confidence level

Secondary strurture and sequence

mature sequence star sequence

5'

3'

   AG     GG   T   G      C          T     A      --G   G   CC   --      CT
     TTACC  CGG CTC GATTCG TTGGTGCAGG CGGGA CTGATT   GCT ACA  GCC  ACGTGG  
     |||||  ||| ||| |||||| |||||||||| ||||| ||||||   ||| |||  |||  ||||||   
     AGTGG  GCT GAG CTAAGT AACTACGTTC GCCCT GGCTAG   CGA TGT  CGG  TGTACC  
AGAAA     -A   C   G      C          C     A      GGA   G   -T   TT      GT

Get mature sequence
Get star sequence
Get miRNA stem-loop seqence
Get miRNA stem-loop ± 20bp
Get dot-bracket miRNA secondary structure
Get miRNA stem-loop ± 500bp
Get miRNA Promoter

miRNA cluster info.

Cluster ID:
Chromosome:
Cluster start:
Cluster end:

No miRNA locus in ± 10k bp interval.

miRNA syntenic block

Syntenic block ID	miRNA locus 1	miRNA locus 1 position	Organism	miRNA locus 2	miRNA locus 2 position
SY-178	Aly-MIR168a	Aly-scaffold_7: 10245612-10245757 -	Eutrema salsugineum	Esa-MIR168c	Esa-scaffold_20: 1047212-1047352 -
SY-187	Aly-MIR168b	Aly-scaffold_8: 2067209-2067339 +	Eutrema salsugineum	Esa-MIR168c	Esa-scaffold_20: 1047212-1047352 -
SY-545	Ath-MIR168a	Ath-Chr4: 10578632-10578777 +	Eutrema salsugineum	Esa-MIR168c	Esa-scaffold_20: 1047212-1047352 -
SY-553	Ath-MIR168b	Ath-Chr5: 18358783-18358913 -	Eutrema salsugineum	Esa-MIR168c	Esa-scaffold_20: 1047212-1047352 -
SY-813	Bol-MIR168a	Bol-C07: 24398324-24398464 +	Eutrema salsugineum	Esa-MIR168c	Esa-scaffold_20: 1047212-1047352 -
SY-822	Bol-MIR168c	Bol-C09: 7067563-7067703 -	Eutrema salsugineum	Esa-MIR168c	Esa-scaffold_20: 1047212-1047352 -
SY-993	Bra-MIR168a	Bra-A06: 28106605-28106745 +	Eutrema salsugineum	Esa-MIR168c	Esa-scaffold_20: 1047212-1047352 -
SY-998	Bra-MIR168b	Bra-A01: 5436066-5436205 +	Eutrema salsugineum	Esa-MIR168c	Esa-scaffold_20: 1047212-1047352 -
SY-1006	Bra-MIR168f	Bra-A09: 13356294-13356434 -	Eutrema salsugineum	Esa-MIR168c	Esa-scaffold_20: 1047212-1047352 -
SY-1229	Cru-MIR168a	Cru-scaffold_7: 8258806-8258945 -	Eutrema salsugineum	Esa-MIR168c	Esa-scaffold_20: 1047212-1047352 -
SY-1231	Cru-MIR168b	Cru-scaffold_8: 1121379-1121509 +	Eutrema salsugineum	Esa-MIR168c	Esa-scaffold_20: 1047212-1047352 -
SY-1268	Esa-MIR168b	Esa-scaffold_1: 8872731-8872872 -	Eutrema salsugineum	Esa-MIR168c	Esa-scaffold_20: 1047212-1047352 -

Expression info.

Mature miRNA expression [+]

Reads per million (RPM)

star miRNA expression [+]

Reads per million (RPM)

Target gene info.[+]

No target gene.

Mature miRNA conservation

Link

No link
No link

Reference

No reference

Esa-MIR168c

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