Bol-MIR166c

Basic info.

• miRNA locus ID
• Bol-MIR166c

• miRNA locus accession
• PmiREN002334

• Organism
• Brassica oleracea

• Genomic location
• Bol-C08  32995401  32995551  +

• Comments
• A member of family MIR166

• Confidence level
• 

Secondary strurture and sequence

       TT  TCTT   A     C  TT      C        T  --T       C       ----   TTTATAAA
  GAGGA  TA    TTG GGGGA TG  GTCTGG TCGAGGAC CT   ATTCTAA TCAATCA    AGT        
  |||||  ||    ||| ||||| ||  |||||| |||||||| ||   ||||||| |||||||    |||         
  TTCCT  AT    AAC CCCCT AC  CGGACC GGCTTCTG GA   TGGGATT AGTTAGT    TCG        
CT     TC  TATT   C     T  TT      A        T  TCT       -       AGTC   TTTGTCTA

• Get mature sequence
• Get star sequence
• Get miRNA stem-loop seqence
• Get miRNA stem-loop ± 20bp
• Get dot-bracket miRNA secondary structure
• Get miRNA stem-loop ± 500bp
• Get miRNA Promoter

miRNA cluster info.

• Cluster ID: 
• Chromosome: 
• Cluster start: 
• Cluster end: 

miRNA syntenic block

Expression info.

Mature miRNA expression [+]

star miRNA expression [+]

Target gene info.[+]

Link

• No link
• No link

Reference

• >High-throughput sequencing identification of novel and conserved miRNAs in the Brassica oleracea leaves. BMC Genomics, 2013