Ath-MIR166b

Basic info.

Secondary strurture and sequence

mature sequence    star sequence
5'



3'
         TTTTTCTT   A     C  TT      C    G   T  --T        A     -   --      TA
   GAGGGA        TTG GGGGA TG  GTCTGG TCGA GAC CT   ATTCTAAT CAATC TCA  TTTGAA  
   ||||||        ||| ||||| ||  |||||| |||| ||| ||   |||||||| ||||| |||  ||||||   
   CTCCCT        AAC CCCCT AC  CGGACC GGCT CTG GA   TGGGATTA GTTAG AGT  AGACTT  
ACA      -CACTATT   C     T  TT      A    G   T  TTT        -     T   CT      AC

miRNA cluster info.

No miRNA locus in ± 10k bp interval.

miRNA syntenic block

Syntenic block ID miRNA locus 1 miRNA locus 1 position Organism miRNA locus 2 miRNA locus 2 position
SY-110 Aly-MIR166a Aly-scaffold_4: 22684208-22684381 + Arabidopsis thaliana Ath-MIR166b Ath-Chr3: 22922192-22922341 +
SY-117 Aly-MIR166b Aly-scaffold_5: 20552771-20552919 + Arabidopsis thaliana Ath-MIR166b Ath-Chr3: 22922192-22922341 +
SY-494 Ath-MIR166a Ath-Chr2: 19176108-19176281 + Arabidopsis thaliana Ath-MIR166b Ath-Chr3: 22922192-22922341 +
SY-499 Ath-MIR166b Ath-Chr3: 22922192-22922341 + Brassica oleracea Bol-MIR166c Bol-C08: 32995401-32995551 +
SY-500 Ath-MIR166b Ath-Chr3: 22922192-22922341 + Brassica rapa Bra-MIR166c Bra-A05: 682813-682983 -
SY-501 Ath-MIR166b Ath-Chr3: 22922192-22922341 + Brassica rapa Bra-MIR166f Bra-A09: 37793849-37794001 +
SY-502 Ath-MIR166b Ath-Chr3: 22922192-22922341 + Capsella rubella Cru-MIR166a Cru-scaffold_4: 14490144-14490324 +
SY-503 Ath-MIR166b Ath-Chr3: 22922192-22922341 + Eutrema salsugineum Esa-MIR166a Esa-scaffold_22: 1329544-1329726 +
SY-504 Ath-MIR166b Ath-Chr3: 22922192-22922341 + Eutrema salsugineum Esa-MIR166d Esa-scaffold_19: 528598-528750 -

Expression info.

Mature miRNA expression [+]

Reads per million (RPM)

star miRNA expression [+]

Reads per million (RPM)

Target gene info.[+]

Target gene ID psRNAtarget RNAhybrid PARE-Seq?

The first number (from 0-2) indicates the category of CleaveLand4 analysis result while the number in brackets displays the number of degradome libraries which verify the miRNA-target interaction. Click the number to download the selected figure of PARE-Seq reads distribution.

AT1G52150.2 0.5 NA NA
AT1G30490.1 1.0 NA NA
AT2G34710.1 1.0 NA NA
AT4G32880.1 1.0 NA NA
AT5G60690.1 1.0 NA NA

Mature miRNA conservation

?

Mature miRNA conservation

    Link

    Reference