Bra-MIR157c

Basic info.

Secondary strurture and sequence

mature sequence    star sequence
5'



3'
TTTGAGA    --TT  T    T         -A             T  -      A   TAT    CA
       GGCA    GA AGTG TGACAGAAG  TAGAGAGCACGGA GA TGAGAT CAA   GGAA  
       ||||    || |||| |||||||||  ||||||||||||| || |||||| |||   ||||   
       TCGT    CT TCAC ACTGTCTTC  ATCTCTCGTGTTT CT ATTCTA GTT   TCTT  
TTCTAAT    TTAT  T    T         CG             C  C      C   ---    TG

miRNA cluster info.

No miRNA locus in ± 10k bp interval.

miRNA syntenic block

Syntenic block ID miRNA locus 1 miRNA locus 1 position Organism miRNA locus 2 miRNA locus 2 position
SY-36 Aly-MIR157a Aly-scaffold_2: 11818138-11818270 - Brassica rapa Bra-MIR157c Bra-A02: 9519858-9519990 +
SY-421 Ath-MIR157a Ath-Chr1: 24913184-24913316 - Brassica rapa Bra-MIR157c Bra-A02: 9519858-9519990 +
SY-918 Bra-MIR157c Bra-A02: 9519858-9519990 + Brassica rapa Bra-MIR157d Bra-A07: 21853207-21853339 +
SY-919 Bra-MIR157c Bra-A02: 9519858-9519990 + Capsella rubella Cru-MIR157c Cru-scaffold_2: 8184653-8184783 -
SY-920 Bra-MIR157c Bra-A02: 9519858-9519990 + Eutrema salsugineum Esa-MIR157d Esa-scaffold_9: 9304808-9304939 -

Expression info.

Mature miRNA expression [+]

Reads per million (RPM)

star miRNA expression [+]

Reads per million (RPM)

Target gene info.[+]

Target gene ID psRNAtarget RNAhybrid PARE-Seq?

The first number (from 0-2) indicates the category of CleaveLand4 analysis result while the number in brackets displays the number of degradome libraries which verify the miRNA-target interaction. Click the number to download the selected figure of PARE-Seq reads distribution.

Brara.D00262.1 1.5 1 NA
Brara.D02564.1 1.5 1 NA
Brara.F03810.1 1.5 NA NA
Brara.G00852.1 1.5 1 NA
Brara.G00853.1 1.5 1 NA
Brara.G01764.1 1.5 1 NA
Brara.H02059.1 1.5 NA NA
Brara.I01777.1 1.5 NA NA
Brara.I03020.1 1.5 1 NA
Brara.B01839.1 2.0 1 NA
Brara.I03021.1 2.0 1 NA

Mature miRNA conservation

?

Mature miRNA conservation

    Link

    Reference