Bra-MIR160c

Basic info.

Secondary strurture and sequence

mature sequence    star sequence
5'



3'
       A     -T  TATA     C       C         TA   TA  T  A    T
  ATATG TATAT  TG    TATGC TGGCTCC TGTATGCCA  CAC  AG TC TCGA 
  ||||| |||||  ||    ||||| ||||||| |||||||||  |||  || || |||| C
  TATAT ATATA  AC    ATACG ACCGAGG GTATGCGGT  GTG  TC AG GGCT 
TT     -     CT  TCTA     A       A         AG   CC  C  C    C

miRNA cluster info.

No miRNA locus in ± 10k bp interval.

miRNA syntenic block

Syntenic block ID miRNA locus 1 miRNA locus 1 position Organism miRNA locus 2 miRNA locus 2 position
SY-67 Aly-MIR160a Aly-scaffold_4: 18997262-18997382 + Brassica rapa Bra-MIR160c Bra-A03: 9900202-9900322 +
SY-450 Ath-MIR160a Ath-Chr2: 16340262-16340382 + Brassica rapa Bra-MIR160c Bra-A03: 9900202-9900322 +
SY-935 Bra-MIR160c Bra-A03: 9900202-9900322 + Capsella rubella Cru-MIR160a Cru-scaffold_4: 11428474-11428594 +

Expression info.

Mature miRNA expression [+]

Reads per million (RPM)

star miRNA expression [+]

Reads per million (RPM)

Target gene info.[+]

Target gene ID psRNAtarget RNAhybrid PARE-Seq?

The first number (from 0-2) indicates the category of CleaveLand4 analysis result while the number in brackets displays the number of degradome libraries which verify the miRNA-target interaction. Click the number to download the selected figure of PARE-Seq reads distribution.

Brara.G02126.1 0.5 NA NA
Brara.G03536.1 0.5 NA NA
Brara.G01369.1 1.0 NA NA
Brara.A00733.1 1.5 NA NA
Brara.K00855.1 1.5 NA NA

Mature miRNA conservation

?

Mature miRNA conservation

Link

Reference