Bra-MIR160f

Basic info.

Secondary strurture and sequence

mature sequence    star sequence
5'



3'
  TGTGTGTGCTCTTAT        C     - C           A   A    CC   C  GT
                 GGTCGTGC TGGCT C CTGTATGCCAC AGT TATA  GAT TC  
                 |||||||| ||||| | ||||||||||| ||| ||||  ||| ||  T
                 CCAGTACG ACTGA G GACATGCGGTG TCG GTAT  CTA AG  
TGTGGTTCTTTTCGAAA        A     T A           A   -    --   A  CA

miRNA cluster info.

No miRNA locus in ± 10k bp interval.

miRNA syntenic block

Syntenic block ID miRNA locus 1 miRNA locus 1 position Organism miRNA locus 2 miRNA locus 2 position
SY-73 Aly-MIR160b Aly-scaffold_7: 11280818-11280940 - Brassica rapa Bra-MIR160f Bra-Scaffold18850: 482412-482534 -
SY-456 Ath-MIR160b Ath-Chr4: 9888966-9889088 + Brassica rapa Bra-MIR160f Bra-Scaffold18850: 482412-482534 -
SY-744 Bol-MIR160b Bol-C01: 6058533-6058655 + Brassica rapa Bra-MIR160f Bra-Scaffold18850: 482412-482534 -
SY-747 Bol-MIR160c Bol-C07: 39151232-39151354 + Brassica rapa Bra-MIR160f Bra-Scaffold18850: 482412-482534 -
SY-938 Bra-MIR160f Bra-Scaffold18850: 482412-482534 - Capsella rubella Cru-MIR160b Cru-scaffold_7: 8935803-8935927 -
SY-939 Bra-MIR160f Bra-Scaffold18850: 482412-482534 - Eutrema salsugineum Esa-MIR160b Esa-scaffold_1: 9864399-9864521 -
SY-940 Bra-MIR160g Bra-A08: 11071954-11072076 - Brassica rapa Bra-MIR160f Bra-Scaffold18850: 482412-482534 -

Expression info.

Mature miRNA expression [+]

Reads per million (RPM)

star miRNA expression [+]

Reads per million (RPM)

Target gene info.[+]

Target gene ID psRNAtarget RNAhybrid PARE-Seq?

The first number (from 0-2) indicates the category of CleaveLand4 analysis result while the number in brackets displays the number of degradome libraries which verify the miRNA-target interaction. Click the number to download the selected figure of PARE-Seq reads distribution.

Brara.G02126.1 0.5 NA NA
Brara.G03536.1 0.5 NA NA
Brara.G01369.1 1.0 NA NA
Brara.A00733.1 1.5 NA NA
Brara.K00855.1 1.5 NA NA

Mature miRNA conservation

?

Mature miRNA conservation

    Link

    Reference