Bra-MIR167a

Basic info.

• miRNA locus ID
• Bra-MIR167a

• miRNA locus accession
• PmiREN002437

• Organism
• Brassica rapa

• Genomic location
• Bra-A03  20192957  20193097  +

• Comments
• A member of family MIR167

• Confidence level
• 

Secondary strurture and sequence

 TAT     AC   -  T T A         C              A  -        ---    C    TAT
    GGTGC  CGG CA C G TGAAGCTGC AGCATGATCTAGTT AC TTTATTTC   TCCG TGTT   
    |||||  ||| || | | ||||||||| |||||||||||||| || ||||||||   |||| ||||   C
    CCACG  GTC GT G C ACTTTGATG TTGTACTAGATTAG TG GAATAGGG   AGGT ACAG   
ATTC     CT   A  T C C         C              C  T        AAA    A    TAC

• Get mature sequence
• Get star sequence
• Get miRNA stem-loop seqence
• Get miRNA stem-loop ± 20bp
• Get dot-bracket miRNA secondary structure
• Get miRNA stem-loop ± 500bp
• Get miRNA Promoter

miRNA cluster info.

• Cluster ID: 
• Chromosome: 
• Cluster start: 
• Cluster end: 

miRNA syntenic block

Expression info.

Mature miRNA expression [+]

star miRNA expression [+]

Target gene info.[+]

Link

• Link To miRbase
• Link To PNDB

Reference

• >The auxin response factor gene family in allopolyploid Brassica napus. PLoS One, 2019