Bra-MIR171e

Basic info.

Secondary strurture and sequence

mature sequence    star sequence
5'



3'
    CA   A     CCT  TT         C       C      --  TCC   TTACACACGT
      CGA AGAGT   CT  GATATTGGC TGGTTCA TCAGAT  CT   AGA          
      ||| |||||   ||  ||||||||| ||||||| ||||||  ||   |||          A
      GCT TCTCG   GA  CTATAACCG GCCGAGT AGTCTA  GA   TCT          
CTCACT   C     --T  CT         C       T      TT  TTC   TACATATATC

miRNA cluster info.

No miRNA locus in ± 10k bp interval.

miRNA syntenic block

Syntenic block ID miRNA locus 1 miRNA locus 1 position Organism miRNA locus 2 miRNA locus 2 position
SY-226 Aly-MIR171a Aly-scaffold_5: 15611102-15611233 + Brassica rapa Bra-MIR171e Bra-A03: 22995436-22995560 +
SY-1052 Bra-MIR171e Bra-A03: 22995436-22995560 + Brassica rapa Bra-MIR170 Bra-A09: 32760603-32760723 +
SY-1053 Bra-MIR171e Bra-A03: 22995436-22995560 + Capsella rubella Cru-MIR171a Cru-scaffold_5: 9180071-9180215 +
SY-1054 Bra-MIR171f Bra-A01: 12690698-12690814 - Brassica rapa Bra-MIR171e Bra-A03: 22995436-22995560 +

Expression info.

Mature miRNA expression [+]

Reads per million (RPM)

star miRNA expression [+]

Reads per million (RPM)

Target gene info.[+]

Target gene ID psRNAtarget RNAhybrid PARE-Seq?

The first number (from 0-2) indicates the category of CleaveLand4 analysis result while the number in brackets displays the number of degradome libraries which verify the miRNA-target interaction. Click the number to download the selected figure of PARE-Seq reads distribution.

Brara.C02285.1 0.0 NA NA
Brara.C04364.1 0.0 0 NA
Brara.D00148.1 0.0 NA NA
Brara.G01771.1 0.0 NA NA
Brara.I00017.1 0.0 NA NA

Mature miRNA conservation

?

Mature miRNA conservation

    Link

    Reference