Osa-MIR171e

Basic info.

Secondary strurture and sequence

mature sequence    star sequence
5'



3'
  GAATGAAATGGTA    T         T       C     C     TGGC    T  AA    T   TG
               GCTA GATGTTGGC CGGCTCA TCAGA GGCAT    GTGA GC  AGCA GCA  
               |||| ||||||||| ||||||| ||||| |||||    |||| ||  |||| |||   
               TGAT CTATAACCG GCCGAGT AGTCT TTGTG    CACT CG  TCGT CGT  
ATGTGTACTTTCTCG    T         T       T     -     --TT    -  -A    T   GC

miRNA cluster info.

No miRNA locus in ± 10k bp interval.

miRNA syntenic block

Syntenic block ID miRNA locus 1 miRNA locus 1 position Organism miRNA locus 2 miRNA locus 2 position
SY-1478 Bdi-MIR171d Bdi-Bd1: 73000902-73001031 - Oryza sativa Osa-MIR171e Osa-Chr3: 1970479-1970615 +
SY-1587 Oni-MIR171c Oni-3: 1642738-1642874 + Oryza sativa Osa-MIR171e Osa-Chr3: 1970479-1970615 +
SY-1656 Osa-MIR171e Osa-Chr3: 1970479-1970615 + Zea mays Zma-MIR171e Zma-1: 7950199-7950323 +

Expression info.

Mature miRNA expression [+]

Reads per million (RPM)

star miRNA expression [+]

Reads per million (RPM)

Target gene info.[+]

Target gene ID psRNAtarget RNAhybrid PARE-Seq?

The first number (from 0-2) indicates the category of CleaveLand4 analysis result while the number in brackets displays the number of degradome libraries which verify the miRNA-target interaction. Click the number to download the selected figure of PARE-Seq reads distribution.

LOC_Os02g44360.1 0.5 NA NA
LOC_Os02g44370.1 0.5 NA NA
LOC_Os04g46860.1 0.5 NA NA
LOC_Os06g01620.1 0.5 NA NA
LOC_Os10g40390.1 1.0 NA NA

Mature miRNA conservation

?

Mature miRNA conservation

    Link

    Reference