Zma-MIR171e

Basic info.

Secondary strurture and sequence

mature sequence    star sequence
5'



3'
   AA      T    G   T         T       C     C   -   C   C   -  ATCA
     ATGGAA AGTA CTA GATGTTGGC CGGCTCA TCAGA GAC GTA GCG GCG AG    
     |||||| |||| ||| ||||||||| ||||||| ||||| ||| ||| ||| ||| ||     
     TACCTT TCAT GAT CTATAACCG GCCGAGT AGTCT TTG CGT CGC CGT TC    
ATACG      C    -   T         T       T     -   T   -   -   A  GTGT

miRNA cluster info.

No miRNA locus in ± 10k bp interval.

miRNA syntenic block

Syntenic block ID miRNA locus 1 miRNA locus 1 position Organism miRNA locus 2 miRNA locus 2 position
SY-1479 Bdi-MIR171d Bdi-Bd1: 73000902-73001031 - Zea mays Zma-MIR171e Zma-1: 7950199-7950323 +
SY-1588 Oni-MIR171c Oni-3: 1642738-1642874 + Zea mays Zma-MIR171e Zma-1: 7950199-7950323 +
SY-1656 Osa-MIR171e Osa-Chr3: 1970479-1970615 + Zea mays Zma-MIR171e Zma-1: 7950199-7950323 +

Expression info.

Mature miRNA expression [+]

Reads per million (RPM)

star miRNA expression [+]

Reads per million (RPM)

Target gene info.[+]

Target gene ID psRNAtarget RNAhybrid PARE-Seq?

The first number (from 0-2) indicates the category of CleaveLand4 analysis result while the number in brackets displays the number of degradome libraries which verify the miRNA-target interaction. Click the number to download the selected figure of PARE-Seq reads distribution.

GRMZM5G876576_T01 0.0 NA NA
GRMZM2G037792_T01 0.5 NA NA
GRMZM2G051785_T01 0.5 NA NA
GRMZM2G098800_T02 0.5 NA NA
GRMZM2G110579_T01 0.5 NA NA
GRMZM2G317338_T01 0.5 0 NA
GRMZM2G418899_T01 0.5 NA NA
GRMZM5G825321_T02 0.5 NA NA
AC187788.3_FGT008 1.0 0 NA
GRMZM2G011947_T01 1.0 NA NA
GRMZM2G079470_T01 1.0 NA NA
GRMZM2G176124_T01 1.0 0 NA
GRMZM2G521781_T01 1.0 0 NA
GRMZM2G118913_T01 2.0 2 NA

Mature miRNA conservation

?

Mature miRNA conservation

    Link

    Reference