Bol-MIR172b

Basic info.

Secondary strurture and sequence

mature sequence    star sequence
5'



3'
   A         C           A    -GAAAT G   AA         TAT
TGT GGTGCAGCA CATTAAGATTC CATG      T AGA  ACCCTAATT   
||| ||||||||| ||||||||||| ||||      | |||  |||||||||    
ACA CTACGTCGT GTAGTTCTAAG GTAT      A TCT  TGGGATTAA   
   A         A           A    ATGTAT G   --         TTA

miRNA cluster info.

No miRNA locus in ± 10k bp interval.

miRNA syntenic block

Syntenic block ID miRNA locus 1 miRNA locus 1 position Organism miRNA locus 2 miRNA locus 2 position
SY-236 Aly-MIR172b Aly-scaffold_6: 1397243-1397369 - Brassica oleracea Bol-MIR172b Bol-C09: 39300315-39300447 +
SY-595 Ath-MIR172b Ath-Chr5: 1188191-1188317 - Brassica oleracea Bol-MIR172b Bol-C09: 39300315-39300447 +
SY-834 Bol-MIR172a Bol-C02: 1546875-1547006 - Brassica oleracea Bol-MIR172b Bol-C09: 39300315-39300447 +
SY-841 Bol-MIR172b Bol-C09: 39300315-39300447 + Brassica rapa Bra-MIR172a Bra-A02: 681031-681163 -
SY-842 Bol-MIR172b Bol-C09: 39300315-39300447 + Brassica rapa Bra-MIR172b Bra-A10: 19091563-19091697 +
SY-843 Bol-MIR172b Bol-C09: 39300315-39300447 + Brassica rapa Bra-MIR172e Bra-A03: 690626-690761 -
SY-844 Bol-MIR172b Bol-C09: 39300315-39300447 + Capsella rubella Cru-MIR172d Cru-scaffold_6: 1174066-1174194 -
SY-845 Bol-MIR172b Bol-C09: 39300315-39300447 + Eutrema salsugineum Esa-MIR172a Esa-scaffold_2: 1159895-1160021 -
SY-846 Bol-MIR172c Bol-C03: 514956-515091 - Brassica oleracea Bol-MIR172b Bol-C09: 39300315-39300447 +

Expression info.

Mature miRNA expression [+]

Reads per million (RPM)

star miRNA expression [+]

Reads per million (RPM)

Target gene info.[+]

Target gene ID psRNAtarget RNAhybrid PARE-Seq?

The first number (from 0-2) indicates the category of CleaveLand4 analysis result while the number in brackets displays the number of degradome libraries which verify the miRNA-target interaction. Click the number to download the selected figure of PARE-Seq reads distribution.

Bol008371 0.5 0 NA
Bol008932 0.5 0 NA
Bol017251 0.5 0 NA
Bol018627 0.5 0 NA
Bol028934 0.5 0 NA
Bol032944 0.5 0 NA
Bol015478 1.5 0 NA
Bol016216 1.5 NA NA
Bol027237 1.5 1 NA
Bol044334 1.5 0 NA

Mature miRNA conservation

?

Mature miRNA conservation

    Link

    Reference