Cru-MIR390a

Basic info.

• miRNA locus ID
• Cru-MIR390a

• miRNA locus accession
• PmiREN002787

• Organism
• Capsella rubella

• Genomic location
• Cru-scaffold_4  11117963  11118088  +

• Comments
• A member of family MIR390

• Confidence level
• 

Secondary strurture and sequence

GAA    --      A  T  A          G           -TG       C   TCACAT
   GTAG  AGAAGA TC GT AAGCTCAGGA GGATAGCGCCA   ATGATCA TAT      
   ||||  |||||| || || |||||||||| |||||||||||   ||||||| |||      A
   CATC  TCTTCT GG TA TTTGAGTCCT CCTATCGCGGT   TATTAGT GTA      
AAA    AT      C  T  C          A           TTA       A   TAACTA

• Get mature sequence
• Get star sequence
• Get miRNA stem-loop seqence
• Get miRNA stem-loop ± 20bp
• Get dot-bracket miRNA secondary structure
• Get miRNA stem-loop ± 500bp
• Get miRNA Promoter

miRNA cluster info.

• Cluster ID: 
• Chromosome: 
• Cluster start: 
• Cluster end: 

miRNA syntenic block

Expression info.

Mature miRNA expression [+]

star miRNA expression [+]

Target gene info.[+]

Link

• No link
• No link

Reference

• No reference