Bra-MIR399c

Basic info.

• miRNA locus ID
• Bra-MIR399c

• miRNA locus accession
• PmiREN002538

• Organism
• Brassica rapa

• Genomic location
• Bra-A09  3808548  3808687  +

• Comments
• A member of family MIR399

• Confidence level
• 

Secondary strurture and sequence

 CAA    A   -     A        T      A      C A     T AGAT  -  TCTTTTTTTTG
    TAAG GGA GCAGT ATAGGGCA CTTTCT TTGGCA G GACAG G    GT GC           
    |||| ||| ||||| |||||||| |||||| |||||| | ||||| |    || ||           T
    ATTC CCT CGTCA TGTCCCGT GAGAGG AACCGT C CTGTC C    CA CG           
ATAA    G   T     C        T      A      T A     T GGTT  T  TTACTTGTGTG

• Get mature sequence
• Get star sequence
• Get miRNA stem-loop seqence
• Get miRNA stem-loop ± 20bp
• Get dot-bracket miRNA secondary structure
• Get miRNA stem-loop ± 500bp
• Get miRNA Promoter

miRNA cluster info.

• Cluster ID: 
• Chromosome: 
• Cluster start: 
• Cluster end: 

miRNA syntenic block

Expression info.

Mature miRNA expression [+]

star miRNA expression [+]

Target gene info.[+]

Link

• No link
• No link

Reference

• No reference